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Changelog

1.0.0 - 2026-10-06

Initial public release of COFOLDER.

Added

  • Bias, Validate, Screen, and Oracle workflows.
  • Support for Boltz1, Boltz2, Boltz Community, and OpenFold3 backends.
  • Protein, ligand, DNA, RNA, and backend-specific constraint inputs.
  • Structural validation, interaction fingerprints, reference-overlap diagnostics, and screening filters and clustering.
  • Python API with composite Oracle objectives and structure gates.
  • Structured public outputs with execution and metric provenance.
  • Installation guides, API documentation, examples, and interactive tutorials.

0.1.0 - 2026-08-06

Development snapshot used for the COFOLDER manuscript. This version is retained as the manuscript reference version.